PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G197900.1.p
Common NameGLYMA_01G197900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 342aa    MW: 38270.7 Da    PI: 5.5878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G197900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13170217355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR++i ++f  L  +lP +     kK++Ka++L  Av+Y+k+Lq
  Glyma.01G197900.1.p 170 QEHIIAERKRRENISKRFIALSAILPGL-----KKMDKASVLGDAVKYVKQLQ 217
                          6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.313167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-11170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-16171230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-13172221No hitNo description
SMARTSM003537.4E-15173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEIAYNYYLP ELQEIEDPTF FDQYQMDSFA CPLDDFDFES FSGSPESNSS YHFNSESTPN  60
CFPAESHDQS FTPARPTKRL KNTCASDFIS HKVSAFSSSQ LISFGHFNAP SPSHASQQFQ  120
NLDFDEKASS ENMDFAAFVS QGSYEDKSFL SSDNRTNQVG ITTRNPIQAQ EHIIAERKRR  180
ENISKRFIAL SAILPGLKKM DKASVLGDAV KYVKQLQERV QTLEEQAAKR TLGSGVLVKR  240
SIIFADDETS DSHCEHSLPE VEVRVSGKDV LIRTQCDKHS GHAAMILSEL EKLYFIVQSS  300
SFLPFGNSKT DVTIIAQMNK ENCMTAKDLL GRLRQALVGH N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631889.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLK7K4T10.0K7K4T1_SOYBN; Uncharacterized protein
STRINGGLYMA01G40600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-56bHLH family protein