PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G195900.1.p
Common NameGLYMA_01G195900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 616aa    MW: 69425.4 Da    PI: 7.5703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G195900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-16274333155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g   k ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.01G195900.1.p 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 333
                          78*******************988885566555*************************98 PP

2AP237.46.3e-12378430355
                  AP2   3 ykGV...rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV    ++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.01G195900.1.p 378 YRGVtrsQRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 430
                          999988767888999****988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-12274333IPR001471AP2/ERF domain
CDDcd000181.19E-21274341No hitNo description
SuperFamilySSF541711.83E-16274343IPR016177DNA-binding domain
PROSITE profilePS5103219.243275341IPR001471AP2/ERF domain
SMARTSM003807.7E-28275347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-16275342IPR001471AP2/ERF domain
PRINTSPR003674.5E-6276287IPR001471AP2/ERF domain
CDDcd000181.92E-23376440No hitNo description
SuperFamilySSF541711.77E-15376439IPR016177DNA-binding domain
SMARTSM003803.6E-30377444IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-17377438IPR001471AP2/ERF domain
PROSITE profilePS5103218.94377438IPR001471AP2/ERF domain
PfamPF008471.5E-6378430IPR001471AP2/ERF domain
PRINTSPR003674.5E-6420440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKPIENGNTV SINYQNSWLG FSLSPQMNIG VPSHLHQTQP SSAAVEAVPP NFYHHTPLHN  60
YGLYYELEGE HVGMSSSLPI MPLKSNASLS GIEALSRSQA QATTTISAMH SSLNSMLINE  120
LLCHGLNNPN NLNHVQEDIS QQQFSYYSTL RNQDVILEGS KHQLPCIAED ENPGLKSWFS  180
RDFHARHAEE SRMIVPLECN GGESGSIGSI TYGDLHSSNL SVSPTSGSSS VTSSPALTNT  240
VATNTKKRWL EMVDQNQKQI VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  300
GQGRKGRQVY LGGYDMEEKA ARAYDMAALK YWGPSSHINF PLENYQNELE EMKNMTRQEY  360
VAHLRRKSSG FSRGASMYRG VTRSQRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  420
YDIAAIKFRG VNAVTNFDIT RYDVEKIMES NNLLSSEQAK RKREMDDGTR SEATVNQKPS  480
TYDHTQETIL MQKRCKNQSE WKMVQFPCPQ QLDQNQRIES CRTQPFSTDL DNMFRHQVEE  540
RSNMGTHLSN PSSLVTSLSS SREESPDKTS MPMLFGMPST VSKLLANVDS WDLSSNLRTA  600
LSMPQMPIFA AWTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.74880.0epicotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G195900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631851.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-137CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK7K4R60.0K7K4R6_SOYBN; Uncharacterized protein
STRINGGLYMA01G40380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]