PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G192600.1.p
Common NameGLYMA_01G192600, LOC100816189
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 244aa    MW: 26474.9 Da    PI: 7.2656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G192600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.5e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Glyma.01G192600.1.p   2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Glyma.01G192600.1.p  92 HVCQAAVETVLR 103
                          ******998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7031107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTVRPM PELLGLDAPT  120
PTADDASEGE VTCTDKWRVR DPNPNFPGTR FPGSRSDKAG SGGKRKRFEE LAKLQTATTD  180
LNLRLTPSFL QNAASYGCRQ EIRWPGSPSM NSEESGTTTA CLESGIGDHY AHDGDRKVLN  240
LFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.327840.0meristem| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G192600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340876.10.0LBD domain-containing transcription factor
RefseqXP_028244414.10.0LOB domain-containing protein 37-like
SwissprotQ9SN238e-81LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445M5C51e-180A0A445M5C5_GLYSO; LOB domain-containing protein 38
TrEMBLI1J9D31e-180I1J9D3_SOYBN; Uncharacterized protein
STRINGGLYMA01G40010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-83LOB domain-containing protein 38