PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G187600.1.p
Common NameGLYMA_01G187600, LOC100797351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 376aa    MW: 40904.4 Da    PI: 5.8067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G187600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16148194455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Glyma.01G187600.1.p 148 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 194
                          6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-20141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-20141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-17147198No hitNo description
PfamPF000102.4E-13148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSP PSSSSSSRPM PTVSCTSNVA HQNVNAHPSF  60
TASQLQDGKI LALDSTASFA SGSAACSPFK GQGASAANVS SSSAGVSENE NDDYDCESEE  120
GVEALAEEVP TKAASSRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA  180
SMLDEAIEYL KQLQLQVQML SMRNGLSLHP MCFPDGLQPL QLSQMGMELS ERNRSTPLKM  240
SATLPLHQDN NPLHYASNQP CVPYPPYINN PETSFGLEPR IQPDTKPLQH KEGSSEPIRG  300
EDILQYQQSS AIHSDTNTLG GSQVVKEFDS GTTLSFPFDT QACEPKDNNS LQPCIGGRDH  360
SGVMIRNSET NIVGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.336390.0cotyledon
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311170.0KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516601.10.0PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA46e-52SPT_ARATH; Transcription factor SPATULA
TrEMBLK7K4M40.0K7K4M4_SOYBN; Uncharacterized protein
STRINGGLYMA01G39451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-41bHLH family protein