PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G176600.1.p
Common NameGLYMA_01G176600, LOC100806404
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 518aa    MW: 54325 Da    PI: 8.7604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G176600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.01G176600.1.p 61 FVCEICNKGFQRDQNLQLHRRGH 83
                         89*******************88 PP

2zf-C2H211.20.0012137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H + +
  Glyma.01G176600.1.p 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-76083No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MPVDLDNVST ASGEASVSSS GNLTVPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKR VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARSQPQTV AKASSESDSK AVTGDSSPPV AVEAPPPLVP PVSSQSNSVV  240
VPSSSLQTQK PELPENSPQI IEEPKVNTAM NGSCSSTSTS TTSSTSNSNS GASSSVFASL  300
FASSSASATA SLHSQTPAFT DLIRAMGHPD HPADLSRPSS SEPISLCLAT NHGSSIFGTG  360
RQERRQYAPP PQPAMSATAL LQKAAQMGAA ATNASFLRGL GIVSSSASTS SVQQDNLQWG  420
HQPVEPESAS VPAGLGLGLP CDSSSGLKEL MMGTPSMFGP KQTTLDFLGL GMAAGGTPGG  480
GLSALITSIG GGLDVTTAAA SFASGEFPGK DIGRRST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35133194364Zinc finger protein JACKDAW
5b3h_F1e-35133194364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.303510.0hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G176600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517239.10.0protein indeterminate-domain 2
RefseqXP_028242337.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A445M4D70.0A0A445M4D7_GLYSO; Protein indeterminate-domain 1
TrEMBLI1J8W70.0I1J8W7_SOYBN; Uncharacterized protein
STRINGGLYMA01G38290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]