PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G169400.1.p
Common NameGLYMA_01G169400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 353aa    MW: 39281 Da    PI: 5.7532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G169400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-19268302135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Glyma.01G169400.1.p 268 CSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 302
                          *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-16262316IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648262298IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14264324No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14266300IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.80E-14267315No hitNo description
PfamPF003207.9E-17268302IPR000679Zinc finger, GATA-type
PROSITE patternPS003440268293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLYQTPYPQP FQFHHPLPSS FSPLLAVPTT PPPLYLPFPQ AEKEMECVEA ALKSNYRKEM  60
TLKLSPQTFT EEVSVQNGTT CDDFFVNDLL DFSHVEEEPE QQEDTPCVSL QHENPSHEPC  120
TFKDDYASVP TSELSVLADD LADLEWLSHF VEDSFSEFSA AFPTVTENPT ACLKEAEPEP  180
EIPVFSFKTP VQTKARSKRT RNGLRVWPFG SPSFTDSSSS STTSSSSSSS PSSPLLIYTQ  240
SLDHLCSEPN TKKMKKKPSS DTLAPRRCSH CGVQKTPQWR TGPLGPKTLC NACGVRFKSG  300
RLLPEYRPAC SPTFSSELHS NHHRKVLEMR QKKETVSVDE TGFAPAHVVP SF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374940.0seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945310.0BT094531.1 Soybean clone JCVI-FLGm-14B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242253.10.0uncharacterized protein LOC100783966
SwissprotQ9FH572e-78GATA5_ARATH; GATA transcription factor 5
TrEMBLI1J8P10.0I1J8P1_SOYBN; Uncharacterized protein
STRINGGLYMA01G37450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-78GATA transcription factor 5