PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G143900.1.p
Common NameGLYMA_01G143900, LOC100798425
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 248aa    MW: 25867.4 Da    PI: 7.752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G143900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-40261261100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++C++apyf +e+ + +fa+vhk+FGasn++kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++
  Glyma.01G143900.1.p  26 PCGACKFLRRKCMPGCIFAPYFDSEEgATHFAAVHKVFGASNISKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVMS 115
                          7*********************998879************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+ +
  Glyma.01G143900.1.p 116 LQAELSYLQGH 126
                          ******99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26325127IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-4026124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSINSSCSIS GGSSSGGNNN SSGGSPCGAC KFLRRKCMPG CIFAPYFDSE EGATHFAAVH  60
KVFGASNISK LLLNIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQVMSLQAEL  120
SYLQGHLATL ELPQPPPPSS PQATTMAPPP LISIAEFIPS SALASSTVPP TYDLSSLFDP  180
MAQTPSWAVQ PRPIESRQYV GSGPSGPSAT IASGGDLQAL ARELLHRHGS APVVACSNPS  240
SSYPISK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.627140.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-111AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517057.11e-180PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-78LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0B2S7911e-180A0A0B2S791_GLYSO; LOB domain-containing protein 18
TrEMBLI1J7Y21e-180I1J7Y2_SOYBN; Uncharacterized protein
STRINGGLYMA01G34540.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.19e-79LOB domain-containing protein 18