PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G134200.1.p
Common NameGLYMA_01G134200, LOC100776462
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 366aa    MW: 40460.3 Da    PI: 4.8223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G134200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C +sF +   L  H+r+H
  Glyma.01G134200.1.p  4 HKCKLCLRSFANGRALGGHMRSH 26
                         79********************9 PP

2zf-C2H212.20.00054221243123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C k+F++   L  H  +H
  Glyma.01G134200.1.p 221 YKCETCEKVFRSYQALGGHRASH 243
                          9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139122.9E-11220245IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-8220296No hitNo description
PROSITE profilePS5015710.201221248IPR007087Zinc finger, C2H2
SMARTSM003550.029221243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
PfamPF139121.6E-10274296IPR007087Zinc finger, C2H2
SMARTSM003550.22274296IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKHKCKLCL RSFANGRALG GHMRSHMLNL PVPPKQSEFV PIQLSFEADS SPSQSSSSFY  60
GLRENPKKSF RFADPEFAFA AADTGSVILQ DRESETESSR NPTRTRSKRA WQLGGDGGGG  120
GGGSGESEKK IMKVCKISKT NESASSVSDT TREEDVAFCL MMLSRDKWKE ENINNLLYDH  180
DQDDDEDEED DEEDENNEDD DGYESEEKSL KKSNNKVRGR YKCETCEKVF RSYQALGGHR  240
ASHKKIKLNN NNNNNNNNEG ELEVQHVVVE KKIHECPVCF RVFASGQALG GHKRTHVIGS  300
STAATTVSVR SSVATVSVRT ASTTRVGDSL IDLNLPAPVD DDEEEEEDVS QFDDSAVSDA  360
EFVKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G134200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965801e-164BT096580.1 Soybean clone JCVI-FLGm-20J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517016.10.0zinc finger protein ZAT9
RefseqXP_028237853.10.0zinc finger protein ZAT9-like
TrEMBLA0A445M2Q20.0A0A445M2Q2_GLYSO; Zinc finger protein ZAT9
TrEMBLK7K3N00.0K7K3N0_SOYBN; Uncharacterized protein
STRINGGLYMA01G32981.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-58C2H2-like zinc finger protein