PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G063700.2.p
Common NameGLYMA_01G063700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 470aa    MW: 52663.8 Da    PI: 7.0694
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G063700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.42.3e-24180243177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCs             sCrrrLa+hnerrrk+q
  Glyma.01G063700.2.p 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCS-------------SCRRRLAGHNERRRKPQ 243
                          6*********************************************9.............9**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-22175227IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.358178242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-29179247IPR004333Transcription factor, SBP-box
PfamPF031101.2E-16181241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MESWSYVPEE KGYLFSDEME FSLDAFMRSR KALVEWDNKS NFVERDGFNS DREVVKSMEF  60
VDLGFPDLLQ KSFHGSLPLE TSSYELDSNN SSKRGNSSTH VIALDSSMGE EESNSKHLSS  120
LVESKTQDSS LIDLKLGRLA DCKGASSDKV EKEGFTLTSI HPTTLSKRAR TSSLPAQAPV  180
CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSSCRR RLAGHNERRR  240
KPQFDYMTGK QHKILQSYQG TKYLGSSLQN KPMFPFQDIF QSSILFPGKH AQISQSGRVK  300
LEEDSIYSSQ LTAPITLDQE SSSCALSLLS DQSQYLSHHA ACNPLTSHRV FSGICIPNRD  360
GQISETPLRI SSADKHAPNE SFPCNTTSKE VIKNRSAATF SNTGHALRVH HGDDICQPSE  420
LLDVKHHFSS EHAATVDLFQ LSSHLQRVEQ QRNSVLVKWE NEDYCFPTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-19172241284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.119341e-52epicotyl
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO141265641e-52
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G063700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517860.10.0squamosa promoter-binding-like protein 6 isoform X2
RefseqXP_028231975.10.0squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0R0L7C60.0A0A0R0L7C6_SOYBN; Uncharacterized protein
STRINGGLYMA01G08056.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-38SBP family protein