PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G022500.1.p
Common NameGLYMA_01G022500, LOC100777168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 511aa    MW: 55861.4 Da    PI: 7.1975
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G022500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-15223282155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.01G022500.1.p 223 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 282
                          57*******************666664478446*************************98 PP

2AP250.55.1e-16325376155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Glyma.01G022500.1.p 325 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 376
                          57****************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18223292IPR016177DNA-binding domain
PfamPF008476.8E-12223282IPR001471AP2/ERF domain
CDDcd000182.43E-22223292No hitNo description
Gene3DG3DSA:3.30.730.101.7E-16224291IPR001471AP2/ERF domain
SMARTSM003804.2E-30224296IPR001471AP2/ERF domain
PROSITE profilePS5103219.44224290IPR001471AP2/ERF domain
PRINTSPR003671.6E-6225236IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-18325385IPR016177DNA-binding domain
PfamPF008472.7E-10325376IPR001471AP2/ERF domain
CDDcd000189.50E-12325384No hitNo description
Gene3DG3DSA:3.30.730.101.2E-18326384IPR001471AP2/ERF domain
SMARTSM003806.0E-31326390IPR001471AP2/ERF domain
PROSITE profilePS5103219.164326384IPR001471AP2/ERF domain
PRINTSPR003671.6E-6366386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MARATNWLSF SLSPMEMLRT SEPQFLQYDA ASATSSHHYY LDNLYTNGWG NGSLKFEQNL  60
NHSDVSFVES SSQSVGHVPP PPPKLEDFLG DSSAVMRYSD SQTETQDSSL THIYDHHHHH  120
HHHHGSTSYF GGDQQDLKAI TGFQAFSTNS GSEVDDSASI GKAQASEFGT HSIESSGNEF  180
AAFSGGTTGT LSLAVALSSE KAVVAAESNS SKKIVDTFGQ RTSIYRGVTR HRWTGRYEAH  240
LWDNSCRREG QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTATTNFP VSNYSKEVEE  300
MKHVTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  360
EEAAEAYDIA AIKFRGANAV TNFEMNRYDV EAIMKSSLPV GGAAKRLRLS LESEQKAPPV  420
NSSSQQQNPQ CGNVSGSINF SAIHQPIASI PCGIPFDSTT AYYPHNLFQH FHPTNAGAAA  480
SAVTSANATA LTALPASAAT EFFIWPHQSY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278070.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G022500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-102AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517351.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_028228416.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A445LXS90.0A0A445LXS9_GLYSO; AP2-like ethylene-responsive transcription factor AIL6 isoform A
TrEMBLI1J5030.0I1J503_SOYBN; Uncharacterized protein
STRINGGLYMA01G02760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-177AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]