PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca118136G01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 90aa    MW: 9922.43 Da    PI: 7.7735
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca118136G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.4e-401089180
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80
                     +CaaCk lrrkC +dC++apyfp e+p+kf nvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i
  Gh_Sca118136G01 10 PCAACKCLRRKCMPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNDVPPHQREDAVNSLAYEAEARMKDPVYGCVGAI 89
                     7*****************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.643990IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-391089IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSYSNPP CAACKCLRRK CMPDCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNDVPP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-50390491LOB family transfactor Ramosa2.1
5ly0_B8e-50390491LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458035.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_012458036.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_012458037.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_016679016.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_016679017.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_017614825.12e-61PREDICTED: LOB domain-containing protein 25-like
RefseqXP_017614826.12e-61PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q32e-50LBD25_ARATH; LOB domain-containing protein 25
SwissprotQ9FML42e-50LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A0D2RYJ34e-60A0A0D2RYJ3_GOSRA; Uncharacterized protein
TrEMBLA0A1U8ILK54e-60A0A1U8ILK5_GOSHI; LOB domain-containing protein 25-like
TrEMBLA0A2P5XNB64e-60A0A2P5XNB6_GOSBA; Uncharacterized protein
STRINGGorai.012G063800.17e-61(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.17e-53LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]