PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca067845G01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 127aa    MW: 14590.8 Da    PI: 11.4496
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca067845G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP51.62.4e-1646764878
                     SEEETTT--SS--S-STTTT-------S--- CS
              SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                     rfhel efDe+krsCrrrLa+hnerrrk++a
  Gh_Sca067845G01 46 RFHELPEFDEAKRSCRRRLAGHNERRRKSSA 76
                     9***************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.024174IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-54561IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.16E-124677IPR004333Transcription factor, SBP-box
PfamPF031104.0E-94673IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MMKRRRKVME GEEQLVAVVG CRRLLVKWKN VGLIYLMPSD TTGAIRFHEL PEFDEAKRSC  60
RRRLAGHNER RRKSSAESSS AAESSSRRGM MISAQLKESH YLADDQRARV NPMAIHGSSS  120
FKRSQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-1146735784squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165371e-139boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5691101e-137KJ569110.1 Gossypium hirsutum squamosa promoter binding protein 3 (SBP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463358.17e-51PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ9S7A95e-20SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A0D2SFJ78e-51A0A0D2SFJ7_G
TrEMBLA0A0K0L9U57e-51A0A0K0L9U5_G
STRINGPOPTR_0011s11770.12e-20(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-12squamosa promoter binding protein-like 5