PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 338aa    MW: 38543.6 Da    PI: 8.7794
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1855genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-114390154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 s+ykGV + k +g+W A+++    n  ++r++lg+f ++ +Aa a++ a+ k++
  Gh_D13G1855 43 SQYKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKSEIDAAMAYDSAAIKFR 90
                 78****8676.8******655...3..5**********99**********9987 PP

2B381.11.1e-25162259184
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f+k+ltpsdv++++rlv+pkk+a ++              g+ k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++D+v F +
  Gh_D13G1855 162 FQKELTPSDVGQLNRLVIPKKYAVKYfppvsgtekenadvGHRKTNDVELIFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKANDVVSFFV 259
                  99*******************************999999999999**************************************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1543101IPR016177DNA-binding domain
CDDcd000184.16E-2143101No hitNo description
PfamPF008471.6E-74390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-174499IPR001471AP2/ERF domain
SMARTSM003806.3E-1844105IPR001471AP2/ERF domain
PROSITE profilePS5103217.4774499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.9E-31158271IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-23161257No hitNo description
SuperFamilySSF1019361.01E-25161263IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-22162259IPR003340B3 DNA binding domain
SMARTSM010191.5E-20162277IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182162277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAEMSSVIL SGEANINSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKSEIDAAM AYDSAAIKFR TGDTHRNFPW NEITIEEPTF LSHYSAEAVL  120
SMIRDGSYQY KFMDFIKAHS GNTKLNLVGT YSNEGLICKQ LFQKELTPSD VGQLNRLVIP  180
KKYAVKYFPP VSGTEKENAD VGHRKTNDVE LIFYDKFMRI WKFRYCYWNS SQSFVFTRGW  240
NRFLKEKELK ANDVVSFFVC ECRKENEVRR FCMIDANKSG NGGTFVSANN VHVGIEVDLQ  300
LRLGHCYLVQ EEQGSMAAAK PKQDDKTEGF KLFGMQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2715825710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461660.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_016669850.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P56e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8HV100.0A0A1U8HV10_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.013G204200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-97RAV family protein