PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 332aa    MW: 37260.1 Da    PI: 9.204
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0717genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.3e-144896155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Gh_D13G0717 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAARRFRG 96
                 89****9888.8*********3.....5**********99*************98 PP

2B397.49.3e-31179270187
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+k+ tpsdv+k++rlv+pk++ae+h     g    +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++  
  Gh_D13G0717 179 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqtGTAFSKEVLLNFEDVRGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDIVSFHRSTG 270
                  89*************************987743444778999**********************************************6644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-1748104IPR016177DNA-binding domain
CDDcd000189.24E-2648106No hitNo description
PfamPF008472.5E-84896IPR001471AP2/ERF domain
SMARTSM003808.4E-2949110IPR001471AP2/ERF domain
PROSITE profilePS5103220.20549104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2049105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-40173289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30174279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-27178268No hitNo description
SMARTSM010191.6E-23179282IPR003340B3 DNA binding domain
PROSITE profilePS5086314.142179281IPR003340B3 DNA binding domain
PfamPF023624.8E-28179269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDGSSCIDDS TTSDSMNVSP LSPLCRVGSG NSGVILDTEA ESRKLPSSKY KGVVPQPNGR  60
WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA ARRFRGRDAV TNFKQAEKTE GDDMEMAFLE  120
SRSKAEIVDM LRKHTYNDEL EQSRRSYGLD GNGKRVVKYN AGFGPFSFGL GLKPREQLFE  180
KAVTPSDVGK LNRLVIPKQH AEKHFPLQTG TAFSKEVLLN FEDVRGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVKEKNLNAG DIVSFHRSTG PEKQLDIDCK ARTGSVSGSA NPAVPVPFVR  300
LFGATYLIYL AVEVIVLVGV MGKEQEKWSC WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5517629311128DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465027.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M51e-129RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2P5R3830.0A0A2P5R383_GOSBA; Uncharacterized protein
STRINGGorai.013G080000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-128RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]