PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 172aa    MW: 19291.9 Da    PI: 6.9912
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0153genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.57.1e-4111109199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+r+C+++C++apyf + +pkkfanvhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ ql+++lal++
  Gh_D13G0153  11 SCAACKLLKRRCSPNCIFAPYFRSGEPKKFANVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIQLQHDLALAR 108
                  6*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Gh_D13G0153 109 A 109
                  5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.40710111IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSGEPKKF ANVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV  120
VVSSDDHHRV ITGPFDDFPV DCGVSFDSFN QNISYELNQE ANMYDFSQIP YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4661146114LOB family transfactor Ramosa2.1
5ly0_B6e-4661146114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.233160.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016705932.11e-127PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL83e-64LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1U8KTX21e-125A0A1U8KTX2_GOSHI; LOB domain-containing protein 21-like
TrEMBLA0A2P5SHR41e-125A0A2P5SHR4_GOSBA; Uncharacterized protein
STRINGGorai.013G016900.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-65LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]