PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1758
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39877.4 Da    PI: 8.4564
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1758genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.87e-24953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk
  Gh_D12G1758  9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53
                 689****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.077161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-26295IPR002100Transcription factor, MADS-box
CDDcd002661.48E-26282No hitNo description
PRINTSPR004041.3E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-201156IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE  60
RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV  120
SMLQARLNEV HKRLSYWNNP DKIDNIEHLR QMENSLRESI ERIRIHKENY GKHHLLPLES  180
TSQFQNAMPL PVMIGGVQEA QPVTWLPNNG NQQMLLHNES NFLPNLDTEC ATDGSLAGYS  240
GFFVPGKQTD IGNSVQVDNT IQESNVLNDL GNNAFLNSQL GNLQGDPRVY QVITDFEAPR  300
PMSNGGHQAW ISSSGPCGIA MFDGNSYHQE LNLPAKSLIQ IVVYRSKQNR LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-14192190MEF2 CHIMERA
6byy_B2e-14192190MEF2 CHIMERA
6byy_C2e-14192190MEF2 CHIMERA
6byy_D2e-14192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438773.10.0PREDICTED: MADS-box protein defh21-like isoform X4
SwissprotQ7X9I01e-105AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A1U8M5U50.0A0A1U8M5U5_GOSHI; agamous-like MADS-box protein AGL65 isoform X1
STRINGGorai.008G194100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-107AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]