PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 206aa    MW: 22314.2 Da    PI: 7.0377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1018genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-39101101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vhk+FGasn  kll+ +p ++r da+ +l+yeA ar+rdPvyG++g+i++lqqq+ +l+aela++
  Gh_D12G1018  10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHKVFGASNAAKLLQGTPVHRRVDAVFTLCYEALARVRDPVYGCAGHIFTLQQQVVNLQAELAYI 107
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Gh_D12G1018 108 QAR 110
                  875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7349111IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSAANNGTGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHKVFGAS NAAKLLQGTP  60
VHRRVDAVFT LCYEALARVR DPVYGCAGHI FTLQQQVVNL QAELAYIQAR LSTLQCLSLV  120
LPQSQAECRS PTTFHSASEL GSDLVCSSDT SMNVFDLPQP QQTSIELAGS PNPFNRVTED  180
EDLQALAWEF VSQCHPGVRF RPSTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-361011911119LOB family transfactor Ramosa2.1
5ly0_B6e-361011911119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154425e-53JX615442.1 Gossypium hirsutum clone NBRI_GE59429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735177.11e-152PREDICTED: LOB domain-containing protein 19-like
SwissprotO813221e-64LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U8N7T61e-151A0A1U8N7T6_GOSHI; LOB domain-containing protein 19-like
STRINGGorai.008G114300.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-67LOB domain-containing protein 31