PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25431 Da    PI: 8.2088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0701genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Gh_D12G0701   2 SCNGCRVLRKGCSESCILRPCLqwidsPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_D12G0701 100 TVLR 103
                  8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4481107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDSPE AQGHATIFVA KFFGRAGLMS FISAVPESQR  60
SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLREGTVRAV PELMAPSPAS  120
GEKSEATKIA CMLKLQETET KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS  180
STGNRLPDNR RPGTPSLNSE ESVTTTCFER GFADQQQQGG ETDRIKLLNL FV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28110.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734826.11e-171PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE85e-83LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1U8N6V21e-170A0A1U8N6V2_GOSHI; LOB domain-containing protein 38-like
STRINGGorai.008G081100.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-85LOB domain-containing protein 39