PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2625
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 422aa    MW: 46316.1 Da    PI: 4.3655
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2625genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.22.8e-34128231297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                  lfqrlw++eDei lLqG++d+++ + +        + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+
  Gh_D11G2625 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHQDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKISSGKEFSFKSPHDQATFEI 225
                  79*******************876655455555445678*********************************************************** PP

       DUF573  92 skkiWg 97 
                  s++iW+
  Gh_D11G2625 226 SRRIWN 231
                  *****7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-32129231IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASEQYGAVF EVSQDDDDEP SSSDNEINEN DDVLNGNEDV LNDEEDEVLL EEEEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSAAAVTI AAISTDELPP DSKSQRVDSV VAEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKISSGK EFSFKSPHDQ ATFEISRRIW NDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHIDSNS  300
NDRVNNDNGN VEALGGGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV LGGGGGYGGR  360
GISGLVMNAI PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735629.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1U8NCR00.0A0A1U8NCR0_GOSHI; mediator-associated protein 1-like
STRINGGorai.007G285700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-61DNA-binding storekeeper protein-related transcriptional regulator