PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 168aa    MW: 18897 Da    PI: 9.2341
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2400genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39111101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slvyeAear+ dPvyG++g i  lq+++ +l+++lal++
  Gh_D10G2400  11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLCDPVYGCIGAIALLQRKMIELQHDLALAR 108
                  6**********************************************************************************************998 PP

       DUF260  99 ee 100
                  ++
  Gh_D10G2400 109 AR 110
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.05710111IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVYEAEARLC DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST  120
GVAGTELDRL TMTGLGMKLR ICYNIYIISG DEGRKKFLEG QKIILQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4661226122LOB family transfactor Ramosa2.1
5ly0_B3e-4661226122LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219420.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719179.11e-122PREDICTED: LOB domain-containing protein 21-like isoform X1
SwissprotQ9SRL81e-62LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1U8M0U81e-121A0A1U8M0U8_GOSHI; LOB domain-containing protein 21-like isoform X1
STRINGGorai.011G291500.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-60LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]