![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D10G2023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 366aa MW: 39938.8 Da PI: 5.6235 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 134.7 | 3.3e-42 | 146 | 241 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrl+se+Dei+lL+G++d+ aktg++p+ d+++fy+fvkksi+ +vsk ql++K+rrLKkKfk++v k k+g++p+fsk+h+qk+felskkiWg Gh_D10G2023 146 LFQRLFSEDDEIALLKGMLDYSAKTGADPHTDMNGFYDFVKKSIHTNVSKVQLMDKVRRLKKKFKNNVGKNKKGEDPTFSKAHEQKAFELSKKIWG 241 69*********************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-36 | 147 | 241 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MAPKHANPVE VPAPAFSSEE DEEVTSSEEE EEGSSTEEEG EEDPKTKSTP LTHKIPPHRK 60 LETANDESDE SGSDSESESD TAAPVAIATK PGSNKPLASS SKRPGESGLD AKEGKRPKKK 120 VGGEGMATAP VVEEVKRTGE DAKKLLFQRL FSEDDEIALL KGMLDYSAKT GADPHTDMNG 180 FYDFVKKSIH TNVSKVQLMD KVRRLKKKFK NNVGKNKKGE DPTFSKAHEQ KAFELSKKIW 240 GVSGKVESST AKSNGKAKGN NKVVAALKAE LPSSSDKKTD NAVPIEVDIV VSKSYSSLLD 300 MKFSVSDTEV GVVKVGLDMV DGEKKAALEA KWRKLQMAQL ELFVERAEFV TEQAKLALKY 360 YKSEDE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454073.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Refseq | XP_012454074.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0D2TC68 | 0.0 | A0A0D2TC68_G | ||||
STRING | POPTR_0001s30110.1 | 1e-61 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25210.1 | 5e-30 | DNA-binding storekeeper protein-related transcriptional regulator |