PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 241aa    MW: 28403.9 Da    PI: 6.7257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1261genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.12.2e-2675166191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++  ++r+ tr gC+a+l++  ++  kw+++ +++eHnH l+p
  Gh_D10G1261  75 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETQVFTSRPATREGCNAMLRIAAKDGVKWVIYGFVKEHNHVLNP 166
                  6****************************************999877345556799********************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2375166IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASTSNPELN TSRNYRQWLT ETFDGHEMLD DELSDSNLDG NGNLINPLDQ HFPMTMEHRE  60
PYIGMEFESA EDAREFYEMY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYT  120
KKETQVFTSR PATREGCNAM LRIAAKDGVK WVIYGFVKEH NHVLNPSKIP PRRSHRIAFC  180
EDEKDLKIRE LSTELHREKK KSAAYQEQLQ MVLNYIEEHT QRLSLKVNLV SNNLRELEYE  240
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455905.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455907.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455908.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455909.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A0D2T7X31e-180A0A0D2T7X3_G
STRINGPOPTR_0007s01930.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808689
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-43FAR1 family protein