PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0477
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 239aa    MW: 25596.3 Da    PI: 8.4932
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0477genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.22.3e-274107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +++l+ a p++ r+ +++sl+yeA+ r+ dP +G+vg++ +++++l++++++
  Gh_D09G0477   4 SCNGCRVLRKGCTESCTIRPCLqwipnAQSQANATLFLAKFYGRAGLINLIGAGPQNLRPGVFKSLLYEACGRIVDPAHGSVGLMCSGNWHLCEAAVD 101
                  6*********************9996656779****************************************************************99 PP

       DUF260  94 lallke 99 
                  ++l ++
  Gh_D09G0477 102 AVLNGS 107
                  988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5483109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPN AQSQANATLF LAKFYGRAGL INLIGAGPQN  60
LRPGVFKSLL YEACGRIVDP AHGSVGLMCS GNWHLCEAAV DAVLNGSPIK QVPSELSASK  120
CPQLKSSFDI RHVSKDKKSD DGLRKVKSQG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG  180
ECLSVETVEC SLAKGDELGN GSDLELELTL GLEPRTKKRG NNINGGGDAT CGGRVEGLC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484293.11e-172PREDICTED: LOB domain-containing protein 40-like isoform X2
SwissprotQ9CA302e-66LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0D2SSS61e-172A0A0D2SSS6_G
STRINGVIT_17s0000g03720.t015e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-67LOB domain-containing protein 42