PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2112
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 256aa    MW: 29013.6 Da    PI: 8.5974
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2112genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.5e-161152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i ++s r+ t+ kR +g++KK +ELS+LCd++++ i++s+  
  Gh_D08G2112 11 ITDDSARKATYKKRTKGLMKKLSELSTLCDIDACSIMYSPYE 52
                 8899***********************************854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-21160IPR002100Transcription factor, MADS-box
CDDcd002668.54E-28285No hitNo description
SuperFamilySSF554551.83E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTRKKVKLAY ITDDSARKAT YKKRTKGLMK KLSELSTLCD IDACSIMYSP YESQLEVWPS  60
PMGVQQVLSK LVTIPEMEKS KNMLNQESFL SQKTTKASEQ LKKHCKENWE KEMTQVMFNT  120
ICGKGVIHGL NFEALSEINL LLDKKMNDID KRIDALARTP FNPQWVSSSS SSSLVVVPPM  180
MMVAPKAMPR IGTEYIVQED VNEMDQIQRQ QWIMELMSNN NNLQTHVGGD GMMFQFGDNI  240
NSNNGLSSNV VFPLGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKGLMKKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755346.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-44AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1U8PW430.0A0A1U8PW43_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.004G229700.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]