PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2304
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 204aa    MW: 21909.8 Da    PI: 4.9851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2304genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.6e-282104198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ Cvl+  +     +++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ e
  Gh_D06G2304   2 SCNGCRVLRKGCSETCVLRSSLrwiesAEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQAALE 99 
                  6*********************9999777889***************************************************************999 PP

       DUF260  94 lallk 98 
                  ++l++
  Gh_D06G2304 100 TVLQG 104
                  88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4561107IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESAE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAALET VLQGGALRPI SAGSWTPSCD  120
ESSDRFCVNS CNFESKPLTT TMMMTGNQSV LTAPSDLSLS VTAKLGGEMR TKTVSFYSEE  180
SEITTLGSNG NEETQDTKIL NLFV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450312.11e-146PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE82e-68LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D2U7Q11e-145A0A0D2U7Q1_GOSRA; Uncharacterized protein
STRINGGorai.010G025100.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-70LOB domain-containing protein 39