PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 364aa    MW: 39483.9 Da    PI: 6.1137
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1934genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11163221563
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +  v  l++e+
  Gh_D06G1934 163 KRAKRIMANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDVTGLTTEN 221
                  9******************************************9999988888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.1E-17159223IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.783161224IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-11163217No hitNo description
PfamPF001701.1E-9163221IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10163215No hitNo description
CDDcd147031.07E-24164215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQYPSLLNPN PLPPIPSKPN ASSTTQTALF FPNSTPFCGS HHRRAHSEVQ FRIPDELDLG  60
SDTFEGLGSE DDLFYNYVDI EKLGGSSKGP DEGGGSGSSS GGSGQNQKGE EISGGSGKGE  120
KNDGKGRHRY SNSVDGCSTM ELIEAKKAMP PDKLAELWNI DPKRAKRIMA NRQSAARSKE  180
RKARYITELE RKVQTLQTEA TTLSAQLTLF QRDVTGLTTE NTELKLRLQA MDQQARLRDA  240
LNEALKKEVE GLKIATGEAT TPTNTFNLGM HHIPYTQSSF LPPQPQHMQI DTQNIQMPPF  300
QPLQSNTLTT NPSVVGATNS YAFADMMQQD PLGQLQGLDI SSGGSHSVKS EGPSISTSES  360
SGTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.154421e-169boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754215.10.0PREDICTED: transcription factor RF2b-like isoform X2
SwissprotO228731e-108BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A1U8PSS30.0A0A1U8PSS3_GOSHI; transcription factor RF2b-like isoform X2
STRINGGorai.010G218700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.13e-96bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]