PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2728
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17707.7 Da    PI: 10.1441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2728genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                  i+n+  r++t+ kR++g+lKK +EL +LC++ ++ iifss
  Gh_D05G2728 10 LISNEYARKTTLKKRKAGLLKKLSELTTLCGVAACAIIFSS 50
                 59**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-19185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.152150IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-17160IPR002100Transcription factor, MADS-box
CDDcd002665.13E-20285No hitNo description
PRINTSPR004048.2E-6323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRKATVYEL ISNEYARKTT LKKRKAGLLK KLSELTTLCG VAACAIIFSS YDAQPDVWPS  60
KAEACQVLKK FKSSPAQQRG KNMMDQTVLL KRSILQLNGR LEKRKKKNRE LEKELALAET  120
MAGENNCDWN NLEQLKELDY QLQENIKLIT DKIKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447675.11e-109PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_012447676.11e-109PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D2UW911e-108A0A0D2UW91_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SIH31e-108A0A2P5SIH3_GOSBA; Uncharacterized protein
STRINGGorai.009G302800.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-17AGAMOUS-like 80