PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 565aa    MW: 64075 Da    PI: 6.8841
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2144genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57367.72.5e-21411493298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqrl+se+Dei+lL+ ++ + ak+g++p +d+++fy+fvkk i+++             Kk+fk++  k ++g++ +fsk+h+q++felsk iWg+
  Gh_D05G2144 411 LFQRLFSEDDEIALLKSMLAYSAKKGADPCADMNGFYDFVKKLIHID-------------KKRFKNNAGK-DKGEDRTFSKAHEQNAFELSKNIWGK 493
                  69******************************************998.............89********.9***********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-17412492IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGIPQEIDDY MKRTIDDSLG LPISTESLQL KLRSSEETQR RLREQYLLLL SKLKEKDQII  60
ERSKAEANMN AVALKRFVQE NQKLAAECAN LLSQCNKWEK ECLLYDRDRE ALMDFGNEAD  120
ERAKKAEIRV HELEEELGKL NEELRFYQHR YESQGIDSSS EGAIKEDNLL EPILAALICK  180
IEVTSGRAFL EANTSLESCL RLLKMWNRLR PSTQKILTLA AEVKTLKKDK EHLRINLSKA  240
EEEVKILFEE NNILDEANKR LVRQSREEKN LHDSGRKHTG SASAKEVTSS EEEEGSSTEE  300
DDEEDPKTQS SPLIQKSRPT RKPDSESESD TAVPIIKPIA IATKPMKGIL SAKKCRSSKP  360
LASLVRASSS KRAGEFAKEK RPKKKVRKEG LAIAPVVEEV KKTGEDAKKL LFQRLFSEDD  420
EIALLKSMLA YSAKKGADPC ADMNGFYDFV KKLIHIDKKR FKNNAGKDKG EDRTFSKAHE  480
QNAFELSKNI WGKEGISGKV ESSTDKKIDE LSKSFDSLLD KKFGVFDMEV EVVEVGLDMV  540
DGEKKTALEA KWRKLQMVQL AGFVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379387KRPKKKVRK
2380386RPKKKVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.15822e-65boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7512655e-71JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447238.10.0PREDICTED: spindle pole body protein pcp1-like isoform X1
TrEMBLA0A0D2TPU40.0A0A0D2TPU4_G
STRINGVIT_18s0001g06600.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-20DNA-binding storekeeper protein-related transcriptional regulator