PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 234aa    MW: 26073.5 Da    PI: 8.4851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2010genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-282103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C + Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++++
  Gh_D05G2010   2 SCNGCRVLRKGCRETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQAAVD 99 
                  6**********************************************************************************************999 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_D05G2010 100 TVLR 103
                  8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.3241107IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCRETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGSLRPV SEISAGVWRP  120
SCDESSDRFC GDESYHFPSR YTESNPLMRM MMMDNQSASA ASDLSLSLTT TKSGNGRRAG  180
RRYEEEKKKA KTMSMYSEES EITASESNEY EGRQERKILK LFRSFLISRR SCSE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445483.11e-163PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN232e-65LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0D2TTK81e-170A0A0D2TTK8_GOSRA; Uncharacterized protein
STRINGGorai.009G218800.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-65LOB domain-containing protein 39