PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 466aa    MW: 50950.7 Da    PI: 5.1633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1594genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053583951254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gh_D05G1594 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                  677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11356409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5356399No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8360401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAEEFHAGIC GETWWDSSKA LFTGCSSPCS TGLAADMGSF GWSADMVDIK ARSSCEESKD  60
SLAFPLGAQQ GDSDSCGSSI LNDSTLQMMG FGLSSSTTSD WNQSLLRSNG RSESYNSVLQ  120
EGINSRLSCR KETGMDSSQI QKEWSPRSYT SPGEDSSITT FKPLNQDFSL EQQRLNSLTS  180
SGNSRPTCQF PIGSVSYGYP STLLQTLFDP DSQAQSQQLS LFNNNRSIDY MSATATYGAN  240
NATESSPSWP RPAPFVRPSL PKQQPSNLHF TNNAPLWNAS ATGVNDVKAG FSPSQLQPEF  300
LLQTFEEKPN CPSLTKKTNT EEVRNSGSPV KKGLSSEPPL LKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLITPYMKQA VPSTQQQSTE  420
SLKEPEGPKQ DLRSLGLCLV PISSTFPVAN ETTVDFWTPT FGGTFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443486.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A0D2QI190.0A0A0D2QI19_G
STRINGVIT_00s0274g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-68bHLH family protein