PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 155aa    MW: 17340.7 Da    PI: 8.1089
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1028genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.33.9e-4161021100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dC++apyfp+++p++fa+vhk+FGasn++k l+a   ++r da+ss+vyeA+ar+rdPvyG+vg i+ lq+q++ql+ +l +++
  Gh_D05G1028   6 PCAACKFLRRRCAEDCIFAPYFPSQDPHRFAIVHKVFGASNISKALQA---NQRGDAASSMVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLTVAQ 100
                  7*******************************************9999...99*****************************************9998 PP

       DUF260  99 ee 100
                  +e
  Gh_D05G1028 101 TE 102
                  86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6035103IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-406100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MRSCSPCAAC KFLRRRCAED CIFAPYFPSQ DPHRFAIVHK VFGASNISKA LQANQRGDAA  60
SSMVYEANAR VRDPVYGCVG AISYLQNQVS QLQMQLTVAQ TELLRIKMQQ DLPSPPYLAP  120
TNNFNNIDSQ PEYLNFPSST NVIQDSSLKT ESIWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-44510510113LOB family transfactor Ramosa2.1
5ly0_B2e-44510510113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684755.11e-110PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-57LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1U8J3351e-108A0A1U8J335_GOSHI; LOB domain-containing protein 12-like
STRINGGorai.009G112900.11e-106(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-60LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]