PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 341aa    MW: 37532 Da    PI: 5.8893
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1925genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-10153200552
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  kr++r + NR +A+rs ++K  ++ eLe+kv++L++e ++L   l   
  Gh_D04G1925 153 KRAKRIIANRRSATRSKEKKALYMSELERKVQTLQTEATTLCAHLTLF 200
                  9**************************************998777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12149213IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783151214IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-8153218No hitNo description
PfamPF001702.8E-8153198IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-9153207No hitNo description
CDDcd147031.80E-20154203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQDPRNLNPN PDPAFPSFTQ NMPSFSNPAQ YRGSYHRRAQ SEVQFRIPDD LDLVSDPFEG  60
VGSEDDMLCS YMDIEMPGES AKGVEAAAGS WSQNPKGEEV SGGSGIGEKY NGGGKGRHRY  120
SNSVDGCSIM ESIEAKKAMA PDKLAELWTI DPKRAKRIIA NRRSATRSKE KKALYMSELE  180
RKVQTLQTEA TTLCAHLTLF QRDTTGLTTE NAELKLRLQA MEQQAQLSDA LNEALKKEVE  240
RLKTATGEIT TPTDTFNLGM HHISYAQSSF FPPQNTQLPP FHPFHSNLLT SSLNTNSHVL  300
ADMMQQDPLG LLQGLDTSSR GSPFVKSESP SICAAERSGT V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.97450.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719003.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228731e-105BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A1U8M0220.0A0A1U8M022_GOSHI; transcription factor RF2b-like
STRINGGorai.012G014500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.12e-97bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]