PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0927
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 304aa    MW: 33733.4 Da    PI: 6.6283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0927genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.11.6e-3284186199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k ltpsdv+k++rlv+pk++ae++    g ++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+++++++ +l++
  Gh_D04G0927  84 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFQRHRTDGDRLFI 181
                  99***************************966777899*************************************************98889999*** PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +++r+
  Gh_D04G0927 182 GWRRR 186
                  ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-4278187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3081185IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-2982176No hitNo description
PfamPF023621.8E-2984186IPR003340B3 DNA binding domain
PROSITE profilePS5086314.14284187IPR003340B3 DNA binding domain
SMARTSM010197.2E-2684187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEPTQTPPSS KLHNPSSISL ENSPWTSHFY PSMFLSSIHA PRHFNLNHDD DEELDDQTST  60
LNTLNPKPNP PENHQLGHET EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGDSSDKG  120
LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ LDAGDIILFQ RHRTDGDRLF  180
IGWRRRGAAV VVVPAATDGG NAVMENDSGG GGGGNGGWSN RGLYQRYPHL GHIQGDLEAN  240
VPYQPDCLHA GSIVKNQATA AGNPKRLVRL FGVNLECHQL DESPPSTPAS SMVSSQGPTA  300
HQFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-468018910120DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19930.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441607.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI38e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D2QVR10.0A0A0D2QVR1_G
STRINGVIT_08s0007g02810.t017e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-59B3 family protein