PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1306
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 205aa    MW: 22909.9 Da    PI: 8.0004
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1306genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP36.61.2e-11147191155
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 
                  +Cqv+gC++d+ + k+yh+rhkv          +v+g+eqrfCqqCsr   +s f
  Gh_D02G1306 147 CCQVHGCNNDIRSSKDYHKRHKV----------AVNGIEQRFCQQCSRLIFFSSF 191
                  6********************97..........689************9887777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-11142191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114112.99145205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-15146191IPR004333Transcription factor, SBP-box
PfamPF031102.5E-7148191IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDLAVDASGS RKALLGRDIK PFTDSEAVES LEFMDFGFSH MNKKPFYGNT SLGFGAEFAN  60
ESAKKLVSPT CMFTSSSYYG EEESGSKQSS SLMEFNSQGS SLIDLKLGRL TDYRDAQHCR  120
HFKETFVVSS VCSAMTAKKA RTTSSPCCQV HGCNNDIRSS KDYHKRHKVA VNGIEQRFCQ  180
QCSRLIFFSS FTLFFPSIWS ELVIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478794.11e-125PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_012478795.11e-125PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0D2PT951e-142A0A0D2PT95_G
STRINGVIT_01s0011g00130.t012e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3624722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-17SBP family protein