PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 170aa    MW: 19107.9 Da    PI: 4.6402
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1201genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.6e-1584162167
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklk 67 
                  +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+             e++  +r+ ++t+Cka++ 
  Gh_D02G1201  84 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqskqdPENATGRRSCSKTDCKANMA 162
                  5*******************************************9999999988776655555559999*******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1384162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDIDLRLPSG EQCKEDEDAN GIDNMLDGDE SLHNGMVQVV GEALRAEDGG EMHSSAVDMV  60
TFKEDTNLEP LSGMEFESHG EAYSFYQEYA RSMGFNTAIQ NSRRSKTSRE FIDAKFACSR  120
YGTKREYDKS FNRPRARQSK QDPENATGRR SCSKTDCKAN MAESNGWTIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.79314e-54boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478555.11e-110PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
SwissprotQ9LIE52e-71FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A0D2NC681e-111A0A0D2NC68_G
TrEMBLA0A0D2PSJ91e-110A0A0D2PSJ9_G
TrEMBLA0A0D2REF61e-111A0A0D2REF6_G
TrEMBLA0A0D2SGB51e-110A0A0D2SGB5_G
TrEMBLA0A0D2SGC11e-111A0A0D2SGC1_G
STRINGVIT_03s0017g01780.t013e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.29e-73far-red elongated hypocotyls 3