PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 221aa    MW: 24426.2 Da    PI: 9.0973
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1806genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.5e-2941081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++p++     p++q++++ +++k++G + +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg++++ ++  +q++++
  Gh_D01G1806   4 SCNGCRVLRKGCSQNCIIRPCLqwiksPDSQANATLFLAKFYGLAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVGMLWSRNWVECQAAVD 101
                  6***********************************************************************************************99 PP

       DUF260  94 lallkee 100
                  ++l +++
  Gh_D01G1806 102 AVLKGSQ 108
                  9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9363109IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSQNCI IRPCLQWIKS PDSQANATLF LAKFYGLAGL LNLIEAGPEN  60
LRPAIFMSLL YEACGRVVNP VYGSVGMLWS RNWVECQAAV DAVLKGSQIT ETSSSESLAQ  120
QSISPLKTYD IRHVFKDPNT IDIDKVKSRT SFKRSATKSK RHVDSKEDAS MFSVETEEGS  180
LVTQTKKGPL LKLGNQTEEI ANIRLELTLG LAPATMQLPR L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5855612e-77JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707139.11e-163PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA301e-75LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A1U8L2921e-161A0A1U8L292_GOSHI; LOB domain-containing protein 42-like
TrEMBLA0A2P5S8681e-162A0A2P5S868_GOSBA; Uncharacterized protein
STRINGGorai.002G217800.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-74LOB domain-containing protein 42