PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1522
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 348aa    MW: 39902.2 Da    PI: 9.3609
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1522genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.5e-114390154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 s++kGV + k +g+W A+++    n  ++r++lg+f t+ +Aa a++ a+ k++
  Gh_A13G1522 43 SQFKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKTEIDAAVAYDSAAIKFR 90
                 789***8666.8******655...3..5**********99**********9987 PP

2B381.39.3e-26166262183
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv+k++rlv+p+k+a ++              g  k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++D+v F 
  Gh_A13G1522 166 FQKELTPSDVGKLNRLVIPRKYAVKYfppvswtekenadiGDRKTNDVELVFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKANDVVSFF 262
                  99*************************************989999**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.67E-2043101No hitNo description
SuperFamilySSF541716.54E-1543101IPR016177DNA-binding domain
PfamPF008473.7E-64489IPR001471AP2/ERF domain
PROSITE profilePS5103217.1354499IPR001471AP2/ERF domain
SMARTSM003801.4E-1744105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-164499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-30161272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-26165267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-22165261No hitNo description
SMARTSM010191.9E-20166281IPR003340B3 DNA binding domain
PfamPF023629.8E-23166262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266166281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEEIPSVIS SGGANTNSDV SDSISTTHQA NKRRRCGGKG NSSQFKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKTEIDAAV AYDSAAIKFR PGDTHRNFPW NEITIEEPKF LSHYSAEAAL  120
SMIRDGSYQY KFMDFIKARS RSIKPNIALN SMGTNSNEGL ICKQLFQKEL TPSDVGKLNR  180
LVIPRKYAVK YFPPVSWTEK ENADIGDRKT NDVELVFYDK FMRIWKFRYC YWNSSQSFVF  240
TRGWNRFLKE KELKANDVVS FFICECRKEN EVRRFCMIDA NKSGNGGTFM AVNTVHVGIE  300
VDLQLRLGHY YPIGDEKHVQ EEQGSMAAAK QKQDDKTEGF KLFGMQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2716226110100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147521e-73JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673697.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P52e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8I6760.0A0A1U8I676_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGGorai.013G204000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-98RAV family protein