PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 211aa    MW: 22948.2 Da    PI: 4.9369
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0015genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.48.8e-42431421100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe +r+da+ss+vyeA ar+rdPvyG++g +++lq+q+++l a+la+++
  Gh_A13G0015  43 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPECQRSDAVSSMVYEAGARIRDPVYGCAGAVFQLQKQVNELLAQLAKAQ 140
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  ++
  Gh_A13G0015 141 AQ 142
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.54842143IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4143140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEYSEPIPTP TISSSPSLSP NSSISSNSPR SPPLSPPPVV ISPCAACKIL RRRCADKCVL  60
APYFPPTEPA KFAIAHRVFG ASNIIKFLQE LPECQRSDAV SSMVYEAGAR IRDPVYGCAG  120
AVFQLQKQVN ELLAQLAKAQ AQVVNMQFQQ ANVLALLCMD MDKDKAPSSP PPNSPQSAVD  180
DTFITNSSYL SFMEDINNDT NLGSLWEPLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-40381456113LOB family transfactor Ramosa2.1
5ly0_B6e-40381456113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6169072e-49JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619062.11e-152PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-75LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2P5XGG61e-152A0A2P5XGG6_GOSBA; Uncharacterized protein
STRINGGorai.013G002900.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-66LOB domain-containing protein 1