PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0495
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 302aa    MW: 32953.5 Da    PI: 7.5858
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0495genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-314107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  Gh_A12G0495   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallke 99 
                  ++l ++
  Gh_A12G0495 102 AVLKGA 107
                  998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381555.3E-971301IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1343109IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG  120
QGPPLKAYDI RHVSKDENSA ASNDVQRVKT RCRVKRTLKP KVNNPVLEEE NRSSEPPEPR  180
CYADEGFEGN RSTSHESSLS HQSELAVMDG ESKETSSMIS EETVAASRLF PAGPELGGKV  240
LEERTVEGSS EIGLELTLGF KPVMSRACQV VVPVKKRRVE AYGTFEDSQT CKFELGLDYP  300
AA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.93920.0boll| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713733.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-112LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U8LJV40.0A0A1U8LJV4_GOSHI; LOB domain-containing protein 41-like
TrEMBLA0A2P5YLR50.0A0A2P5YLR5_GOSBA; Uncharacterized protein
STRINGGorai.008G056000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-106LOB domain-containing protein 41