PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2675
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 252aa    MW: 27674.2 Da    PI: 7.6246
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2675genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39421431101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+++
  Gh_A11G2675  42 PCGACKFLRRKCVSGCIFAPHFGSDQgAAKFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASLQAELVMV 139
                  7***********************9989********************************************************************** PP

       DUF260  98 keel 101
                  +++l
  Gh_A11G2675 140 QNQL 143
                  9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.12141143IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3942140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MADPQCHGLS ETCRKGVGKR TTMPVEAKPV VVSEVAPIPI APCGACKFLR RKCVSGCIFA  60
PHFGSDQGAA KFAAVHKVFG ASNVSKLLLH IPMNRRHDAV VTISYEAQAR LSDPVYGCVS  120
TILSLQQQVA SLQAELVMVQ NQLINSRFAM ANALQSSQQQ QQHHQHHHHQ QQQQHLASLQ  180
PAYSNNSSAS NNLINISNFA SNFDLVAETT TAPNSSQSMD HLQLSRPCHD DEDDEQDSRI  240
PPVFVNQIIH RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-364114910115LOB family transfactor Ramosa2.1
5ly0_B1e-364114910115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754974.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV36e-74LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1U8PXG80.0A0A1U8PXG8_GOSHI; LOB domain-containing protein 20
STRINGGorai.007G346200.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-63LOB domain-containing protein 20