PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 271aa    MW: 30268 Da    PI: 6.3437
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2618genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.2e-54861901102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  Gh_A11G2618  86 QLQMFWANQmqeIEHASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 183
                  89******9778899*********************************************************************************** PP

        NF-YC  96 vprdelk 102
                  +prdelk
  Gh_A11G2618 184 IPRDELK 190
                  ****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.9E-3464180IPR009072Histone-fold
PfamPF008088.9E-21108171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.9E-37109186IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDRSEQTEQQ QQQQQQSVMG VVAGTGPMGY STGPYQAAPV AASGTPATAV PSPTQPPATF  60
SGSPHQLAYQ QAQQFHHQQQ QQQHQQLQMF WANQMQEIEH ASDFKNHSLP LARIKKIMKA  120
DEDVRMISAE APVIFAKACE IFVLELTLRS WIHTEENKRR TLQKNDIAAA ISRTDVFDFL  180
VDIIPRDELK EEGLGVTKAT IPFVGSPTDM PYYYVPQHPV RHAGMTMGKP VDQAALYPGQ  240
QPRPPVAFVP WPHGQPQPPQ PQQSEQQQSD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C2e-4295186194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-4295186194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.53250.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434649.11e-161PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_012434650.11e-161PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0B0P2A31e-164A0A0B0P2A3_G
STRINGPOPTR_0007s07830.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-81nuclear factor Y, subunit C2