PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25654.8 Da    PI: 10.4071
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2521genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.9e-1373113343
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                  i n+s r++t+ kR +g+ KK  EL +LC++e+  +i s++
  Gh_A11G2521  73 ITNDSARKTTYKKRTKGLVKKVRELTTLCGIEAFAVINSPD 113
                  89*******************************99999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-1463123IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.26963111IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-1965157IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-66585IPR002100Transcription factor, MADS-box
CDDcd002666.78E-2165148No hitNo description
PfamPF003197.3E-1473113IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-685100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSTNLISLVP VLKKWNEKVY GHIATRKHSL GRRIDNVQAA LDPIMVMNLV SSLDIKHLSS  60
PFLFRKKTKL AYITNDSARK TTYKKRTKGL VKKVRELTTL CGIEAFAVIN SPDFGSQAEV  120
WPSLEDARRL LSEFKKLPLS KQNNKMVNQE SFLEQSLVKA TQQLWKLSEE NRQKELEEVM  180
FESLSGKGIL QSLNAMDLDE VGRLVKQNLT DIDDRIRVLT KASHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125960.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431018e-80AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635023.11e-111PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-39AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2P5YTP11e-110A0A2P5YTP1_GOSBA; Uncharacterized protein
STRINGGorai.013G210300.13e-96(Gossypium raimondii)
STRINGGorai.013G210600.13e-96(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]