PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 422aa    MW: 46601.5 Da    PI: 4.3526
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2316genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.68.8e-34128231297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                  lfqrlw++eDei lLqG++d+++ + +        + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k+ sgke+sf+++hdq +fe+
  Gh_A11G2316 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHQDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKICSGKEFSFKSPHDQATFEI 225
                  79*******************876655455555445678*********************************************************** PP

       DUF573  92 skkiWg 97 
                  s++iW 
  Gh_A11G2316 226 SRRIWS 231
                  *****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.2E-32129231IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASEQYGGVF EVSQDDDEEP SSSDNEVDEN DDVLNVNEDV LNDEDDEVLL EEDEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSASAVTI AAISTDELPP DSKRQRVDSV VAEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKICSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHMDSNS  300
NDRVNNDNGN VEALGVGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV MVGGGGYGER  360
GISGLVMNAM PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631565.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0D2SLF40.0A0A0D2SLF4_G
STRINGPOPTR_1258s00200.13e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.17e-62DNA-binding storekeeper protein-related transcriptional regulator