PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1963
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25514.1 Da    PI: 8.8951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1963genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.5e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     p++q  ++ +v+k+FG++ ++++++a+pe++r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+++e
  Gh_A11G1963   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGYATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLLEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_A11G1963 100 TVLR 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3351107IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGYATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLLE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGSLRSM PELMSPTPAS  120
DKTSEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS  180
FTGKRATDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229DKKLLKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.2060.0boll| leaf| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5842842e-68JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680643.11e-171PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN232e-89LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1U8IW701e-170A0A1U8IW70_GOSHI; LOB domain-containing protein 38-like
STRINGGorai.007G222000.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-84LOB domain-containing protein 37