PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 161aa    MW: 18109 Da    PI: 9.232
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2153genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.7e-40111101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+r+C++ C++apyf +++pkkf  vhk+FGasnv+k+l ++pee+red+++slvyeAear+rdPvyG++g i  lq+++ +l+++lal++
  Gh_A10G2153  11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFTKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLRDPVYGCIGAIALLQRKMIELQHDLALAR 108
                  6**********************************************************************************************998 PP

       DUF260  99 ee 100
                  ++
  Gh_A10G2153 109 AR 110
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.41610111IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF TKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST  120
GVAGTELDRL TMTGLEMKLR ICYNIYIVFG DEGKKVFGGL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4661226122LOB family transfactor Ramosa2.1
5ly0_B1e-4661226122LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219420.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457487.12e-97PREDICTED: LOB domain-containing protein 21-like isoform X2
SwissprotQ9SRL85e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0D2RUE23e-96A0A0D2RUE2_GOSRA; Uncharacterized protein
STRINGGorai.011G291500.16e-97(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.19e-61LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]