PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 234aa    MW: 25363.1 Da    PI: 5.1688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1813genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1971121155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr p+   k kr +lg+f ta eAa a+++a+k+++g
  Gh_A10G1813  71 CNYRGVRQRT-WGKWVAEIRAPN---KGKRLWLGTFPTAVEAASAYDEAAKAMYG 121
                  56*****999.**********93...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-3071129No hitNo description
PfamPF008471.9E-1371121IPR001471AP2/ERF domain
PROSITE profilePS5103221.7272129IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2072129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-3072130IPR001471AP2/ERF domain
SMARTSM003803.4E-3572135IPR001471AP2/ERF domain
PRINTSPR003676.5E-107384IPR001471AP2/ERF domain
PRINTSPR003676.5E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGFKDNQNPE MGSSLFPVSS RKRKRRDGLS VADTLKLWSE NSEAKQSRKA PAKGSKKGCM  60
KGKGGPQNQN CNYRGVRQRT WGKWVAEIRA PNKGKRLWLG TFPTAVEAAS AYDEAAKAMY  120
GAKAILNMPQ GSDSDSVATP SHGFSQATTT TTATCGGSES AMDGPVDSEA PSTSGAMDMK  180
GEGGEVNRRG DDTDYSWLEG LESLQFFDDI PMDYVGNNSV WDNCELFDID EFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1772134568ATERF1
3gcc_A4e-1772134568ATERF1
5wx9_A5e-17691301173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648505.11e-175PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotA2WL199e-48DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF79e-48DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A2P5X6311e-165A0A2P5X631_GOSBA; Uncharacterized protein
STRINGGorai.011G235900.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-32DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sun SJ, et al.
    Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.
    J. Exp. Bot., 2010. 61(10): p. 2807-18
    [PMID:20460361]
  3. Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T
    Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).
    Biotechnol. Lett., 2011. 33(8): p. 1689-97
    [PMID:21528404]
  4. Cui M, et al.
    Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.
    Plant Physiol. Biochem., 2011. 49(12): p. 1384-91
    [PMID:22078375]
  5. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  6. Li X, et al.
    LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
    Plant Cell Physiol., 2013. 54(7): p. 1172-85
    [PMID:23695503]
  7. Schmidt R, et al.
    Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
    Plant Cell, 2013. 25(6): p. 2115-31
    [PMID:23800963]
  8. Huang YC,Huang WL,Hong CY,Lur HS,Chang MC
    Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance.
    Rice (N Y), 2012. 5(1): p. 33
    [PMID:24279948]
  9. Zhang XX, et al.
    OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean.
    PLoS ONE, 2013. 8(12): p. e83011
    [PMID:24376625]
  10. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  11. Ma T, et al.
    LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.
    Plant Cell Rep., 2014. 33(9): p. 1507-18
    [PMID:24913125]
  12. Zhao J, et al.
    Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.
    Physiol Plant, 2015. 154(3): p. 381-94
    [PMID:25263631]
  13. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  14. Gao Y, et al.
    A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.
    Plant Mol. Biol., 2015. 87(4-5): p. 413-28
    [PMID:25636202]
  15. Cai W, et al.
    Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance.
    PLoS ONE, 2015. 10(6): p. e0131599
    [PMID:26121399]
  16. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  17. Sato H, et al.
    The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1756-67
    [PMID:26841113]
  18. Yu Y, et al.
    Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.
    Genet. Mol. Res., 2016.
    [PMID:26909954]