PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1234
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 158aa    MW: 18598.3 Da    PI: 10.2227
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1234genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.87.8e-231831091
         FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                 +GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++  ++r+ tr gC+a+l++  ++ gkw+++ +++eHnH l+p
  Gh_A10G1234  1 MGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHVLNP 83
                 7********************************99888233444699********************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-20183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGFTIRNNRT RRSLKDNSII GREFVCSKEG FRAEKYTKKE TRVFTSRPAT REGCNAMLRI  60
AAKDGGKWVI YGFVKEHNHV LNPSKVPPRR SHRIAFCEDE KDLKIRELST ELHREKKKSA  120
AYQEQLQMVL NYIEEHTQRL SLKVNLVSNN LRELEYED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455910.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_012455909.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455908.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455907.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_012455905.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A0B0PJW41e-114A0A0B0PJW4_G
STRINGPOPTR_0007s01930.19e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808689
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-33FAR1 family protein