PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1326
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 274aa    MW: 30314.5 Da    PI: 7.0379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1326genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.21.1e-3040142199
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k ltpsdv+k++rlv+pk++ae++     + +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F ++++++ +++
  Gh_A09G1326  40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGDIILFLRHRSDGDRFF 136
                  99***************************963.3457789************************************************8776777778 PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  ++ +r+
  Gh_A09G1326 137 IGCRRR 142
                  888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-4234149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-3138142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2938141No hitNo description
PROSITE profilePS5086313.9340143IPR003340B3 DNA binding domain
PfamPF023626.0E-2840142IPR003340B3 DNA binding domain
SMARTSM010194.3E-2540142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFFSSNHPSL SFNFNQHEDH SESEINPNQS HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ  60
HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG  120
DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNNT SCGGGGDTRG LYHGHPYLGH  180
IQGHAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV  240
SVSSQQGPTT HQFYNSQLSY TSNYMVSHAS SLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-443714211117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19931e-111boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485771.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ23e-68Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2S3S00.0A0A0D2S3S0_G
STRINGVIT_08s0007g02810.t013e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.25e-67B3 family protein