PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0469
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 240aa    MW: 25734.6 Da    PI: 8.6122
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0469genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.31.8e-264108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered.amsslvyeAearardPvyGavgvilklqqqleqlka 92 
                  +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +++l+ a p++ r++ +++sl+yeA+ r+ dPv+G+vg++ +++++l+++++
  Gh_A09G0469   4 SCNGCRVLRKGCTESCTIRPCLqwipsAQSQANATLFLAKFYGRAGLINLICAGPQNLRPAgVFKSLLYEACGRIVDPVHGSVGLMCSGNWHLCEAAV 101
                  6*********************9996555778*************************9865389*********************************9 PP

       DUF260  93 elallke 99 
                  +++l ++
  Gh_A09G0469 102 DAVLNGA 108
                  9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.7453110IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-214103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPS AQSQANATLF LAKFYGRAGL INLICAGPQN  60
LRPAGVFKSL LYEACGRIVD PVHGSVGLMC SGNWHLCEAA VDAVLNGAPI KQVPSELSAT  120
KCPPLKSSFD IRHVSKDKKS NDGLRKVKSR GRFKRSASKP KPKLEEVVFE PVSKGGDSWE  180
GDCLSVETVE GSLAKGDELG DGSDLELELT LGLEPRTKNR GNNINGRGDA TCGGRVEGLC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484292.11e-157PREDICTED: LOB domain-containing protein 40-like isoform X1
SwissprotQ9CA309e-67LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0B0MZS21e-164A0A0B0MZS2_G
STRINGVIT_17s0000g03720.t012e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.17e-68LOB domain-containing protein 42