PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28964.4 Da    PI: 9.787
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2260genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.41.6e-171150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+
  Gh_A08G2260 11 ITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIMYSP 50
                 89*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.806149IPR002100Transcription factor, MADS-box
CDDcd002661.23E-23285No hitNo description
SuperFamilySSF554558.5E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIMYSP YESQPEVWPS  60
AMGVQRVLSK FKKVPEMEQS KKMVNQESFL AQRIAKANEQ LKKQCKENRE KEMTHVMFQN  120
LIGKAGILGL NVVDLNDLAW LIDQNLKEIA KRVDALAKTS LNPQGQGGSS SSVAVPPMVT  180
PEVAITGDMV QGEVNNMDWM QRQQWIMELM NNNNNPQTQT QTHVGFNGEE TVFPFGDNIN  240
PNVNNGLWSN AFLPWEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159861e-155JX615986.1 Gossypium hirsutum clone NBRI_GE60302 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737965.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-67AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1U8NG310.0A0A1U8NG31_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.004G292000.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-67AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]